I'm a Ph.D. in bioinformatics for noncoding RNA investigation.

Contact information

Address: 320 Yueyang Road, Shanghai, China 200031

Email: [email protected]

👩🏻‍💻 Work experience

postdoc.

2020.07-present

CAS-MPG Partner Institute for Computational Biology, SINH, CAS, China.

📚 Education

Ph.D. in Computational Biology

2014.09-2020.07

CAS-MPG Partner Institute for Computational Biology, SINH, CAS, China.

B.S. in Biological science

2010.09-2014.07

University of Science and Technology of China, China

🛠 Skills

💻 Technology

High-throughput sequencing data analysis: RNA-seq, RIP-seq, ChIP-seq, CLIP-seq, etc.

Programming: C++, Python, Perl, R, Shell script, Javascript

Web development: Flask, Bootstrap, MySQL, SQLite

📜 Articles and Talks

  1. Guo CJ, Ma XK#, Xing YH, Zheng CC, Xu YF, Shan L, Zhang J, Wang SH, Wang YM, Carmichael GG, Yang L and Chen LL. Distinct processing of lncRNAs contributes to non-conserved functions in stem cells. Cell. 2020, 181(3): 621-636.e22
  2. Ma XK, Wang MR, Liu CX, Dong R, Carmichael GG, Chen LL and Yang L. CIRCexplorer3: A CLEAR pipeline for direct comparison of circular and linear RNA expression. Genomics Proteomics Bioinformatics, 2019, 17(5): 511–521
  3. Zhu YJ, Zheng B, Luo GJ, Ma XK#, Lu XY, Lin XM, Yang S, Zhao Q, Wu T, Li ZX, Liu XL, Wu R, Liu JF, Ge Y, Yang L, Wang HY* and Chen L*. Circular RNAs negatively regulate cancer stem cells by physically binding FMRP against CCAR1 complex in hepatocellular carcinoma. Theranostics. 2019, 9(12): 3526-3540
  4. Dong R, Ma XK#, Li GW and Yang L*. CIRCpedia v2: An Updated Database for Comprehensive Circular RNA Annotation and Expression Comparison. Genomics Proteomics Bioinformatics, 2018, 16(4): 226-233
  5. Dong R, Ma XK#, Chen LL* and Yang L*. Increased complexity of circRNA expression during species evolution. RNA Biol, 2017, 14(8): 1064-1074
  6. Dong R, Zhang XO, Zhang Y, Ma XK, Chen LL and Yang L*. CircRNA-derived pseudogenes. Cell Res, 2016, 26(6): 747-750
  7. Dong R, Ma XK, Chen LL, Yang L. Genome-Wide Annotation of circRNAs and Their Alternative Back-Splicing/Splicing with CIRCexplorer Pipeline. Methods Mol Biol, 2019, 1870: 137-149 (Book chapter)