VIGR Webinar May 1, 2020. Updated May 11, 2020

Presentation Slides

10x_analysis_webinar.pdf

Popular Tools + Methods

• Software List
• Current best practices in single‐cell RNA‐seq analysis: a tutorial
• Experimental design for single-cell RNA sequencing
• Rotating the knee (plot) and related yoga
• seurat
• monocle
• kallisto + bustools
• immcantation (immune cell profiling)
• Harmony
• MAGIC + PHATE

10X Genomics Resources

• Cell Ranger:
  • Getting started with Cell Ranger- Dave Tang
  • Single-cell RNA sequencing (Cell Ranger) - UCONN
  • Tutorials from 10X
• Feature Barcoding Analysis