Output data files will all be available in the ./example_data/example_cNMF directory including:

• Z-score unit gene expression program matrix - example_data/example_cNMF/example_cNMF.gene_spectra_score.k_10.dt_0_01.txt
• TPM unit gene expression program matrix - example_data/example_cNMF/example_cNMF.gene_spectra_tpm.k_10.dt_0_01.txt
• Usage matrix - example_data/example_cNMF/example_cNMF.usages.k_10.dt_0_01.consensus.txt
• K selection plot - example_data/example_cNMF/example_cNMF.k_selection.png
• Clustergram diagnostic plot - example_data/example_cNMF/example_cNMF.clustering.k_10.dt_0_01.pdf