Bizon Software Stack

Data Preparation

• motioncor
• CTFFIND/Gctf

2D Image processing and 3D

• Relion

Create PBD Outputs and classifications

• Scipion
• UCSF Chimera

Obtain structure files and prepare simulation environment

• QwikMD - root system
• CHARMM-GUI

Condict simulation

• LAMMPS
• NAMD