1. Introduction to PyRosetta

https://gist.github.com/ManvithaPonnapati/cecc4a5e43f045bb8a10307967e150c9

2. Using PyRosetta to Fold a Protein

https://gist.github.com/ManvithaPonnapati/91bcf94c22b03bb48e170e484643387e?short_path=cc62be6

3. How to find the fragment of the protein that contributes the most to the binding energy between two proteins

https://gist.github.com/ManvithaPonnapati/02bfc55379e84f1042f4ba41a8661c51?short_path=2d520aa

4. How to fold a protein using AlphaFold, ESMFold and other machine learning models

https://gist.github.com/ManvithaPonnapati/4988f0df8722f1c6f18d3afbeaf054ce

5. How to find the sequence of a protein that makes a desired shape

https://gist.github.com/ManvithaPonnapati/4988f0df8722f1c6f18d3afbeaf054ce

Other useful resources

https://github.com/sokrypton/ColabFold

https://github.com/RosettaCommons/RFDesign

https://github.com/dauparas/ProteinMPNN

https://www.pyrosetta.org/documentation/tutorials. - PyRosetta Jupyter Notebooks