Implementation the DeepIGeoS Paper
:page_facing_up: DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation (2018)
additional page : Notion page (in Korean :kr:)
Please check environments and requirements before you start. If required, we recommend you to either upgrade versions or install them for smooth running.
Ubuntu 16.04Python 3.7.11
dotmap
GeodisTK
opencv-python
tensorboard
torch
torchio
torchvision
tqdm
PyQt5
Download the BraTS 2021 dataset form web BraTS 2021 using load_datasets.sh
.
$ bash load_datasets.sh
$ python train_pnet.py -c configs/config_pnet.json
$ python train_rnet.py -c configs/config_rnet.json